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1

Optimized Orbitrap HCD for Quantitative Analysis of Phosphopeptides

Yi Zhang, Scott B. Ficarro, Shaojuan Li, Jarrod A. Marto

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2009

Language:

english

File:

PDF, 926 KB

english, 2009

2

Electrospray Ionization Fourier Transform Ion Cyclotron Resonance at 9.4 T

Michael W. Senko, Christopher L. Hendrickson, Ljiljana Paša-Tolić, Jarrod A. Marto, Forest M. White, Shenheng Guan, Alan G. Marshall

Journal:

Rapid Communications in Mass Spectrometry

Year:

1996

Language:

english

File:

PDF, 476 KB

english, 1996

3

Wide-mass-range axialization for high-resolution Fourier-transform ion cyclotron resonance mass spectrometry of externally generated ions

Jarrod A. Marto, Shenheng Guan, Alan G. Marshall, Dr Michelle V. Buchanan

Journal:

Rapid Communications in Mass Spectrometry

Year:

1994

Language:

english

File:

PDF, 571 KB

english, 1994

4

Online Nanoflow Reversed Phase-Strong Anion Exchange-Reversed Phase Liquid Chromatography–Tandem Mass Spectrometry Platform for Efficient and In-Depth Proteome Sequence Analysis of Complex Organisms

Zhou, Feng, Sikorski, Timothy W., Ficarro, Scott B., Webber, James T., Marto, Jarrod A.

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

5

mzStudio: A Dynamic Digital Canvas for User-Driven Interrogation of Mass Spectrometry Data

Ficarro, Scott, Alexander, William, Marto, Jarrod

Journal:

Year:

2017

Language:

english

File:

PDF, 7.43 MB

english, 2017

6

A two-electrode ion trap for Fourier transform ion cyclotron resonance mass spectrometry

Jarrod A. Marto, Alan G. Marshall, Lutz Schweikhard

Journal:

International Journal of Mass Spectrometry and Ion Processes

Year:

1994

Language:

english

File:

PDF, 1.86 MB

english, 1994

7

Attomole Biomolecule Mass Analysis by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance

Solouki, Touradj., Marto, Jarrod A., White, Forest M., Guan, Shengheng., Marshall, Alan G.

Journal:

Analytical Chemistry

Year:

1995

Language:

english

File:

PDF, 2.02 MB

english, 1995

8

multiplierz v2.0: a Python-based ecosystem for shared access and analysis of native mass spectrometry data

Alexander, William M., Ficarro, Scott B., Adelmant, Guillaume, Marto, Jarrod A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

9

SRPKIN-1: A Covalent SRPK1/2 Inhibitor that Potently Converts VEGF from Pro-angiogenic to Anti-angiogenic Isoform

Hatcher, John M., Wu, Guowei, Zeng, Chuyue, Zhu, Jie, Meng, Fan, Patel, Sherrina, Wang, Wenqiu, Ficarro, Scott B., Leggett, Alan L., Powell, Chelsea E., Marto, Jarrod A., Zhang, Kang, Ki Ngo, Jacky Ch

Journal:

Cell Chemical Biology

Year:

2018

Language:

english

File:

PDF, 3.26 MB

english, 2018

10

Novel Linear Quadrupole Ion Trap/FT Mass Spectrometer: Performance Characterization and Use in the Comparative Analysis of Histone H3 Post-translational Modifications

Syka, John E. P., Marto, Jarrod A., Bai, Dina L., Horning, Stevan, Senko, Michael W., Schwartz, Jae C., Ueberheide, Beatrix, Garcia, Benjamin, Busby, Scott, Muratore, Tara, Shabanowitz, Jeffrey, Hunt,

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 138 KB

english, 2004

11

mzAPI: a new strategy for efficiently sharing mass spectrometry data

Askenazi, Manor, Parikh, Jignesh R, Marto, Jarrod A

Journal:

Year:

2009

Language:

english

File:

PDF, 910 KB

english, 2009

12

Transcriptional Repressor ZBTB1 Promotes Chromatin Remodeling and Translesion DNA Synthesis

Kim, Hyungjin, Dejsuphong, Donniphat, Adelmant, Guillaume, Ceccaldi, Raphael, Yang, Kailin, Marto, Jarrod A., D’Andrea, Alan D.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.11 MB

english, 2014

13

Stabilization of the methyl-CpG binding protein ZBTB38 by the deubiquitinase USP9X limits the occurrence and toxicity of oxidative stress in human cells

Miotto, Benoit, Marchal, Claire, Adelmant, Guillaume, Guinot, Nadège, Xie, Ping, Marto, Jarrod A., Zhang, Lingqiang, Defossez, Pierre-Antoine

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

14

Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration

Maria Simarro, Alfredo Gimenez-Cassina, Nancy Kedersha, Jean-Bernard Lazaro, Guillaume O. Adelmant, Jarrod A. Marto, Kirsten Rhee, Sarah Tisdale, Nika Danial, Charaf Benarafa, Anonio Orduña, Paul Ande

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 1.02 MB

english, 2010

15

Variance function estimation in quantitative mass spectrometry with application to iTRAQ labeling

Mandel, Micha, Askenazi, Manor, Zhang, Yi, Marto, Jarrod A.

Journal:

The Annals of Applied Statistics

Year:

2013

Language:

english

File:

PDF, 2.35 MB

english, 2013

16

Discovery of MFH290: A Potent and Highly Selective Covalent Inhibitor for Cyclin-Dependent Kinase 12/13

Liu, Yao, Hao, Mingfeng, Leggett, Alan, Gao, Yang, Ficarro, Scott B, Che, Jianwei, He, Zhixiang, Olson, Calla, Marto, Jarrod A., Kwiatkowski, nicholas, Zhang, Tinghu, Gray, Nathanael S

Journal:

Journal of Medicinal Chemistry

Year:

2020

File:

PDF, 1.20 MB

2020

17

Library dependent LC-MS/MS acquisition via mzAPI/Live

Webber, James T., Askenazi, Manor, Ficarro, Scott B., Iglehart, Max A., Marto, Jarrod A.

Journal:

Year:

2013

Language:

english

File:

PDF, 660 KB

english, 2013

18

Ascorbate peroxidase proximity labeling coupled with biochemical fractionation identifies promoters of endoplasmic reticulum mitochondrial contacts

Cho, Il-Taeg, Adelmant, Guillaume, Lim, Youngshin, Marto, Jarrod A, Cho, Ginam, Golden, Jeffrey A

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 838 KB

english, 2017

19

Multi-Edge Gene Set Networks Reveal Novel Insights into Global Relationships between Biological Themes

Parikh, Jignesh R., Xia, Yu, Marto, Jarrod A., Csermely, Peter

Journal:

Year:

2012

Language:

english

File:

PDF, 927 KB

english, 2012

20

Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding

Twomey, Edward C., Ji, Zhejian, Wales, Thomas E., Bodnar, Nicholas O., Ficarro, Scott B., Marto, Jarrod A., Engen, John R., Rapoport, Tom A.

Journal:

Year:

2019

Language:

english

File:

PDF, 7.51 MB

english, 2019

21

Discovery of Covalent MKK4/7 Dual Inhibitor

Jiang, Jie, Jiang, Baishan, He, Zhixiang, Ficarro, Scott B., Che, Jianwei, Marto, Jarrod A., Gao, Yang, Zhang, Tinghu, Gray, Nathanael S.

Journal:

Cell Chemical Biology

Year:

2020

File:

PDF, 2.85 MB

2020

22

An External Source 7 T Fourier Transform Ion Cyclotron Resonance Mass Spectrometer with Electrostatic Ion Guide

Forest M. White, Jarrod A. Marto, Alan G. Marshall

Journal:

Rapid Communications in Mass Spectrometry

Year:

1996

Language:

english

File:

PDF, 538 KB

english, 1996

23

Genome-scale proteome quantification by DEEP SEQ mass spectrometry

Zhou, Feng, Lu, Yu, Ficarro, Scott B., Adelmant, Guillaume, Jiang, Wenyu, Luckey, C. John, Marto, Jarrod A.

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 3.85 MB

english, 2013

24

Pharmacological targeting of the pseudokinase Her3

Xie, Ting, Lim, Sang Min, Westover, Kenneth D, Dodge, Michael E, Ercan, Dalia, Ficarro, Scott B, Udayakumar, Durga, Gurbani, Deepak, Tae, Hyun Seop, Riddle, Steven M, Sim, Taebo, Marto, Jarrod A, Jänn

Journal:

Nature Chemical Biology

Year:

2014

Language:

english

File:

PDF, 1.68 MB

english, 2014

25

Interrogating the hidden phosphoproteome

Kang, Un-Beom, Alexander, William M., Marto, Jarrod A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

26

Hepatic Dysfunction Caused by Consumption of a High-Fat Diet

Soltis, Anthony R., Kennedy, Norman J., Xin, Xiaofeng, Zhou, Feng, Ficarro, Scott B., Yap, Yoon Sing, Matthews, Bryan J., Lauffenburger, Douglas A., White, Forest M., Marto, Jarrod A., Davis, Roger J.

Journal:

Year:

2017

Language:

english

File:

PDF, 13.91 MB

english, 2017

27

The complete peptide dictionary – A meta-proteomics resource

Manor Askenazi, Jarrod A. Marto, Michal Linial

Journal:

Year:

2010

Language:

english

File:

PDF, 255 KB

english, 2010

28

Improved Immobilized Metal Affinity Chromatography for Large-Scale Phosphoproteomics Applications

Ndassa, Yasmine M., Orsi, Chris, Marto, Jarrod A., Chen, She, Ross, Mark M.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 373 KB

english, 2006

29

Sub1 and RPA Associate with RNA Polymerase II at Different Stages of Transcription

Timothy W. Sikorski, Scott B. Ficarro, John Holik, TaeSoo Kim, Oliver J. Rando, Jarrod A. Marto, Stephen Buratowski

Journal:

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

30

Structure and Ubiquitination-Dependent Activation of TANK-Binding Kinase 1

Tu, Daqi, Zhu, Zehua, Zhou, Alicia Y., Yun, Cai-hong, Lee, Kyung-Eun, Toms, Angela V., Li, Yiqun, Dunn, Gavin P., Chan, Edmond, Thai, Tran, Yang, Shenghong, Ficarro, Scott B., Marto, Jarrod A., Jeon,

Journal:

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

31

Delayed Fragmentation and Optimized Isolation Width Settings for Improvement of Protein Identification and Accuracy of Isobaric Mass Tag Quantification on Orbitrap-Type Mass Spectrometers

Savitski, Mikhail M., Sweetman, Gavain, Askenazi, Manor, Marto, Jarrod A., Lang, Manja, Zinn, Nico, Bantscheff, Marcus

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 980 KB

english, 2011

32

Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously

Cho, Hongbaek, Wivagg, Carl N., Kapoor, Mrinal, Barry, Zachary, Rohs, Patricia D. A., Suh, Hyunsuk, Marto, Jarrod A., Garner, Ethan C., Bernhardt, Thomas G.

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 1.70 MB

english, 2016

33

Rationally Designed Covalent BCL6 Inhibitor That Targets a Tyrosine Residue in the Homodimer Interface

Teng, Mingxing, Ficarro, Scott B., Yoon, Hojong, Che, Jianwei, Zhou, Jing, Fischer, Eric S., Marto, Jarrod A., Zhang, Tinghu, Gray, Nathanael S.

Journal:

ACS Medicinal Chemistry Letters

Year:

2020

File:

PDF, 636 KB

2020

34

Understanding the first steps in embryonic stem cell exit from the pluripotent state

C. John Luckey, Yu Lu, Jarrod A. Marto

Journal:

Transfusion (Wiley)

Year:

2011

Language:

english

File:

PDF, 332 KB

english, 2011

35

Subfemtomole MS and MS/MS Peptide Sequence Analysis Using Nano-HPLC Micro-ESI Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Martin, Susan E., Shabanowitz, Jeffrey, Hunt, Donald F., Marto, Jarrod A.

Journal:

Analytical Chemistry

Year:

2000

Language:

english

File:

PDF, 121 KB

english, 2000

36

Improved Electrospray Ionization Efficiency Compensates for Diminished Chromatographic Resolution and Enables Proteomics Analysis of Tyrosine Signaling in Embryonic Stem Cells

Ficarro, Scott B., Zhang, Yi, Lu, Yu, Moghimi, Ahmadali R., Askenazi, Manor, Hyatt, Elzbieta, Smith, Eric D., Boyer, Leah, Schlaeger, Thorsten M., Luckey, C. John, Marto, Jarrod A.

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 4.95 MB

english, 2009

37

Structural Basis for Substrate Selectivity of the E3 Ligase COP1

Uljon, Sacha, Xu, Xiang, Durzynska, Izabela, Stein, Sarah, Adelmant, Guillaume, Marto, Jarrod A., Pear, Warren S., Blacklow, Stephen C.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.75 MB

english, 2016

38

Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling

Job D. Cardoza, Jignesh R. Parikh, Scott B. Ficarro, Jarrod A. Marto

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 881 KB

english, 2012

39

Structural and Biochemical Analyses Reveal the Mechanism of Glutathione S-Transferase Pi 1 Inhibition by the Anti-cancer Compound Piperlongumine

Harshbarger, Wayne, Gondi, Sudershan, Ficarro, Scott B., Hunter, John, Udayakumar, Durga, Gurbani, Deepak, Singer, William, Liu, Yan, Li, Lianbo, Marto, Jarrod A., Westover, Kenneth D.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

40

Serum protein immunogenicity: Implications for liver xenografting

Susanna Celli, Jarrod A. Marto, Rocco Falchetto, Jeffrey Shabanowitz, Luis A. Valdivia, John J. Fung, Donald F. Hunt, Robert H. Kelly

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 229 KB

english, 2000

41

Pathway Palette: A rich internet application for peptide-, protein- and network-oriented analysis of MS data

Manor Askenazi, Shaojuan Li, Saurav Singh, Jarrod A. Marto

Journal:

Year:

2010

Language:

english

File:

PDF, 447 KB

english, 2010

42

Structure of a pseudokinase-domain switch that controls oncogenic activation of Jak kinases

Toms, Angela V, Deshpande, Anagha, McNally, Randall, Jeong, Youngjee, Rogers, Julia M, Kim, Chae Un, Gruner, Sol M, Ficarro, Scott B, Marto, Jarrod A, Sattler, Martin, Griffin, James D, Eck, Michael J

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 671 KB

english, 2013

43

Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity

Ferguson, Fleur M., Doctor, Zainab M., Ficarro, Scott B., Browne, Christopher M., Marto, Jarrod A., Johnson, Jared L., Yaron, Tomer M., Cantley, Lewis C., Kim, Nam Doo, Sim, Taebo, Berberich, Matthew

Journal:

Cell Chemical Biology

Year:

2019

Language:

english

File:

PDF, 6.64 MB

english, 2019

44

Ion trajectories in an electrostatic ion guide for external ion source fourier transform ion cyclotron resonance mass spectrometry

Jarrod A. Marto, Alan G. Marshall, Michael A. May, Patrick A. Limbach

Journal:

Journal of the American Society for Mass Spectrometry

Year:

1995

Language:

english

File:

PDF, 1.08 MB

english, 1995

45

Concordant and opposite roles of DNA-PK and the "facilitator of chromatin transcription" (FACT) in DNA repair, apoptosis and necrosis after cisplatin

Janna Sand-Dejmek, Guillaume Adelmant, Bijan Sobhian, Anne S Calkins, Jarrod Marto, Dirk J Iglehart, Jean-Bernard Lazaro

Journal:

Molecular Cancer

Year:

2011

Language:

english

File:

PDF, 1010 KB

english, 2011

46

Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21

Zhang, Cuiyan, Li, Xiaotong, Adelmant, Guillaume, Dobbins, Jessica, Geisen, Christoph, Oser, Matthew G., Wucherpfenning, Kai W., Marto, Jarrod A., Kaelin, William G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

47

Overcoming Resistance to the THZ Series of Covalent Transcriptional CDK Inhibitors

Gao, Yang, Zhang, Tinghu, Terai, Hideki, Ficarro, Scott B., Kwiatkowski, Nicholas, Hao, Ming-Feng, Sharma, Bandana, Christensen, Camilla L., Chipumuro, Edmond, Wong, Kwok-kin, Marto, Jarrod A., Hammer

Journal:

Cell Chemical Biology

Year:

2017

Language:

english

File:

PDF, 3.23 MB

english, 2017

48

Crystal Structure of a Coiled-Coil Domain from Human ROCK I

Tu, Daqi, Li, Yiqun, Song, Hyun Kyu, Toms, Angela V., Gould, Christopher J., Ficarro, Scott B., Marto, Jarrod A., Goode, Bruce L., Eck, Michael J., Kursula, Petri

Journal:

Year:

2011

Language:

english

File:

PDF, 2.27 MB

english, 2011

49

Development of a covalent inhibitor of gut bacterial bile salt hydrolases

Adhikari, Arijit A., Seegar, Tom C. M., Ficarro, Scott B., McCurry, Megan D., Ramachandran, Deepti, Yao, Lina, Chaudhari, Snehal N., Ndousse-Fetter, Sula, Banks, Alexander S., Marto, Jarrod A., Blackl

Journal:

Nature Chemical Biology

Year:

2020

File:

PDF, 4.81 MB

2020

50

Structural Characterization of Phospholipids by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Marto, Jarrod A., White, Forest M., Seldomridge, Staci., Marshall, Alan G.

Journal:

Analytical Chemistry

Year:

1995

Language:

english

File:

PDF, 741 KB

english, 1995

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